floresgut_taxa: Gut taxon abundances from Flores et al.

In hallucigenia-sparsa/seqgroup: Analysis of Sequencing Data with Groups

Gut taxon abundances from Flores et al.

Description

Data were obtained through 16S sequencing (V4 region) of faecal material.

Usage

data(floresgut_taxa)

Format

An object of class matrix (inherits from array) with 323 rows and 637 columns.

Details

OTU abundances were downloaded from QIITA in Nov 2020 (ID: 2151). Control and non-gut samples, samples with less than 10000 reads, with a mislabel chance above 50 were also removed. Samples were rarefied to 10000 reads and OTUs were aggregated to genus level. OTUs without a known genus were summed into a garbage taxon named sumUnknown. Samples were ordered first by subject and then by time (week number).

Value

Taxon x sample matrix of size 323 x 637

References

Flores et al. (2014) Temporal variability is a personalized feature of the human microbiome Genome Biology 15, 531 Genome Biology

Examples

data(floresgut_taxa)

hallucigenia-sparsa/seqgroup documentation built on July 6, 2022, 1:11 p.m.