ibd_functions | R Documentation |
Function (i.e. enzyme-coding gene) abundances extracted from whole-genome shotgun data of stool samples.
data(ibd_functions)
An object of class data.frame
with 2113 rows and 155 columns.
Stool samples were taken from patients with Crohn's disease (CD, n=68) and ulcerative colitis (UC, n=53) as well as healthy controls (n=34). The order of samples matches those of ibd_taxa. Functional assignment was carried out with the HUMAnN2 pipeline. Enzyme names as well as EC numbers are given.
Function x sample matrix of size 2113 x 155
Franzosa et al. (2019) Gut microbiome structure and metabolic activity in inflammatory bowel disease Nature Microbiology 4, 293-305 Nature Microbiology
data(ibd_functions)
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