Analysis of Sequencing Data with Groups

Global functions | |
---|---|

.onAttach | Source code |

aggregateTaxa | Man page Source code |

assignColorsToGroups | Man page Source code |

assignMetadataTypes | Man page Source code |

barebonesCoNet | Man page Source code |

binaryToMultinomial | Source code |

buildNetwork | Man page Source code |

clr | Man page Source code |

colorGraph | Source code |

compareDistribs | Man page Source code |

compareDistribsPure | Source code |

compareGroups | Man page Source code |

computeAssociations | Source code |

computeKld | Source code |

computeSignMatrix | Source code |

correctPvalMatrix | Source code |

exportSubset | Source code |

exportToCoNet | Man page Source code |

filterMetadata | Man page Source code |

filterSamplesWithMetadataValues | Source code |

filterTaxonMatrix | Man page Source code |

findClusters | Man page Source code |

findClustersGivenK | Source code |

forbiddenCombisBipartite | Source code |

formatLineages | Source code |

get.kld | Source code |

getColorVectorGivenTaxaAndColorMap | Source code |

getCoreTaxa | Man page Source code |

getMetadataSubset | Source code |

getPval | Source code |

getRandomLineage | Source code |

getScores | Source code |

getTaxonomy | Source code |

groupBarplot | Man page Source code |

groupsToNumeric | Source code |

ibd_functions | Man page |

ibd_lineages | Man page |

ibd_metadata | Man page |

ibd_taxa | Man page |

intersectTables | Man page Source code |

is.Count | Source code |

is.Count.Matrix | Source code |

listToMat | Source code |

makeRandomString | Source code |

matchAgeAndGender | Source code |

mergeATC | Man page Source code |

mergeTables | Man page Source code |

metadataToNumeric | Man page Source code |

myNorm | Source code |

networkIntersectSig | Man page Source code |

normalize | Man page Source code |

rarefyFilter | Source code |

selectSamplesGivenMetadata | Man page Source code |

seqPCoA | Man page Source code |

seqgroup | Man page |

setNAToGroupMean | Man page Source code |

sheldon | Source code |

silhouette | Man page Source code |

sortTaxa | Source code |

tableMatcher | Source code |

toPhyloseq | Man page Source code |

transitionProbabs | Man page Source code |

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