API for hallucigenia-sparsa/seqgroup
Analysis of Sequencing Data with Groups

Global functions
.onAttach Source code
aggregateTaxa Man page Source code
assignColorsToGroups Man page Source code
assignMetadataTypes Man page Source code
barebonesCoNet Man page Source code
binaryToMultinomial Source code
buildNetwork Man page Source code
clr Man page Source code
colorGraph Source code
compareDistribs Man page Source code
compareDistribsPure Source code
compareGroups Man page Source code
computeAssociations Source code
computeKld Source code
computeSignMatrix Source code
correctPvalMatrix Source code
exportSubset Source code
exportToCoNet Man page Source code
filterMetadata Man page Source code
filterSamplesWithMetadataValues Source code
filterTaxonMatrix Man page Source code
findClusters Man page Source code
findClustersGivenK Source code
forbiddenCombisBipartite Source code
formatLineages Source code
get.kld Source code
getColorVectorGivenTaxaAndColorMap Source code
getCoreTaxa Man page Source code
getMetadataSubset Source code
getPval Source code
getRandomLineage Source code
getScores Source code
getTaxonomy Source code
groupBarplot Man page Source code
groupsToNumeric Source code
ibd_functions Man page
ibd_lineages Man page
ibd_metadata Man page
ibd_taxa Man page
intersectTables Man page Source code
is.Count Source code
is.Count.Matrix Source code
listToMat Source code
makeRandomString Source code
matchAgeAndGender Source code
mergeATC Man page Source code
mergeTables Man page Source code
metadataToNumeric Man page Source code
myNorm Source code
networkIntersectSig Man page Source code
normalize Man page Source code
rarefyFilter Source code
selectSamplesGivenMetadata Man page Source code
seqPCoA Man page Source code
seqgroup Man page
setNAToGroupMean Man page Source code
sheldon Source code
silhouette Man page Source code
sortTaxa Source code
tableMatcher Source code
toPhyloseq Man page Source code
transitionProbabs Man page Source code
hallucigenia-sparsa/seqgroup documentation built on June 15, 2020, 10:37 p.m.