Files in hallucigenia-sparsa/seqgroup

Analysis of Sequencing Data with Groups

.Rbuildignore

.Rprofile

.gitignore

.travis.yml

DESCRIPTION

LICENSE

Meta/vignette.rds

NAMESPACE

R/aggregateTaxa.R R/barebonesCoNet.R R/buildNetwork.R R/compareDistribs.R R/compareGroups.R R/exportToCoNet.R R/filterMetadata.R R/findClusters.R R/firstlib.R R/floresgut_lineages.R R/floresgut_metadata.R R/floresgut_taxa.R R/getCoreTaxa.R R/groupBarplot.R R/ibd_functions.R R/ibd_lineages.R R/ibd_metadata.R R/ibd_taxa.R R/mergeATC.R R/mergeTables.R R/metadataToNumeric.R R/networkIntersectSig.R R/selectSamplesGivenMetadata.R R/seqPCoA.R R/seqgroup.R R/silhouette.R R/sortSamples.R R/toPhyloseq.R README.md

data/floresgut_lineages.rda

data/floresgut_metadata.rda

data/floresgut_taxa.rda

data/ibd_functions.rda

data/ibd_lineages.rda

data/ibd_metadata.rda

data/ibd_taxa.rda

doc/seqgroup_tour.R doc/seqgroup_tour.Rmd

doc/seqgroup_tour.html

docs/404.html

docs/LICENSE-text.html

docs/articles/figure_seqgroup_tour/unnamed-chunk-10-1.png

docs/articles/figure_seqgroup_tour/unnamed-chunk-10-2.png

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docs/articles/figure_seqgroup_tour/unnamed-chunk-8-1.png

docs/articles/figure_seqgroup_tour/unnamed-chunk-9-1.png

docs/articles/index.html

docs/articles/seqgroup_tour.html

docs/authors.html

docs/bootstrap-toc.css

docs/bootstrap-toc.js

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/link.svg

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/aggregateTaxa.html

docs/reference/assignColorsToGroups.html

docs/reference/assignMetadataTypes.html

docs/reference/barebonesCoNet-1.png

docs/reference/barebonesCoNet-2.png

docs/reference/barebonesCoNet-3.png

docs/reference/barebonesCoNet.html

docs/reference/buildNetwork-1.png

docs/reference/buildNetwork-2.png

docs/reference/buildNetwork.html

docs/reference/clr.html

docs/reference/compareDistribs-1.png

docs/reference/compareDistribs-2.png

docs/reference/compareDistribs.html

docs/reference/compareGroups-1.png

docs/reference/compareGroups-2.png

docs/reference/compareGroups-3.png

docs/reference/compareGroups.html

docs/reference/exportToCoNet.html

docs/reference/filterMetadata.html

docs/reference/filterTaxonMatrix.html

docs/reference/findClusters.html

docs/reference/floresgut_lineages.html

docs/reference/floresgut_metadata.html

docs/reference/floresgut_taxa.html

docs/reference/getCoreTaxa.html

docs/reference/getTaxonomy.html

docs/reference/groupBarplot-1.png

docs/reference/groupBarplot-2.png

docs/reference/groupBarplot-3.png

docs/reference/groupBarplot.html

docs/reference/ibd_functions.html

docs/reference/ibd_lineages.html

docs/reference/ibd_metadata.html

docs/reference/ibd_taxa.html

docs/reference/index.html

docs/reference/intersectTables.html

docs/reference/makeColorsGivenMetadata.html

docs/reference/mergeATC.html

docs/reference/mergeTables.html

docs/reference/metadataToNumeric.html

docs/reference/networkIntersectSig.html

docs/reference/normalize.html

docs/reference/removeGroupsWithMissingValues.html

docs/reference/selectGroups.html

docs/reference/selectSamplesGivenMetadata.html

docs/reference/seqPCoA-1.png

docs/reference/seqPCoA-2.png

docs/reference/seqPCoA.html

docs/reference/seqgroup.html

docs/reference/setNAToGroupMean.html

docs/reference/sheldon.html

docs/reference/silhouette.html

docs/reference/sortSamples.html

docs/reference/toPhyloseq.html

docs/reference/transitionProbabs-1.png

docs/reference/transitionProbabs.html

inst/.DS_Store

man/.DS_Store

man/aggregateTaxa.Rd man/assignColorsToGroups.Rd man/assignMetadataTypes.Rd man/barebonesCoNet.Rd man/buildNetwork.Rd man/clr.Rd man/compareDistribs.Rd man/compareGroups.Rd man/exportToCoNet.Rd man/filterMetadata.Rd man/filterTaxonMatrix.Rd man/findClusters.Rd man/floresgut_lineages.Rd man/floresgut_metadata.Rd man/floresgut_taxa.Rd man/getCoreTaxa.Rd man/groupBarplot.Rd man/ibd_functions.Rd man/ibd_lineages.Rd man/ibd_metadata.Rd man/ibd_taxa.Rd man/intersectTables.Rd man/makeColorsGivenMetadata.Rd man/mergeATC.Rd man/mergeTables.Rd man/metadataToNumeric.Rd man/networkIntersectSig.Rd man/normalize.Rd man/removeGroupsWithMissingValues.Rd man/selectGroups.Rd man/selectSamplesGivenMetadata.Rd man/seqPCoA.Rd man/seqgroup.Rd man/setNAToGroupMean.Rd man/silhouette.Rd man/sortSamples.Rd man/toPhyloseq.Rd man/transitionProbabs.Rd

renv.lock

renv/.gitignore

renv/activate.R

renv/settings.dcf

seqgroup.Rproj

vignettes/.gitignore

vignettes/seqgroup_tour.Rmd

hallucigenia-sparsa/seqgroup documentation built on July 6, 2022, 1:11 p.m.