Files in hallucigenia-sparsa/seqgroup
Analysis of Sequencing Data with Groups

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
Meta/vignette.rds
NAMESPACE
R/aggregateTaxa.R R/barebonesCoNet.R R/buildNetwork.R R/compareDistribs.R R/compareGroups.R R/exportToCoNet.R R/filterMetadata.R R/findClusters.R R/firstlib.R R/getCoreTaxa.R R/groupBarplot.R R/ibd_functions.R R/ibd_lineages.R R/ibd_metadata.R R/ibd_taxa.R R/mergeATC.R R/mergeTables.R R/metadataToNumeric.R R/networkIntersectSig.R R/selectSamplesGivenMetadata.R R/seqPCoA.R R/seqgroup.R R/silhouette.R R/toPhyloseq.R README.md
data/ibd_functions.rda
data/ibd_lineages.rda
data/ibd_metadata.rda
data/ibd_taxa.rda
doc/seqgroup_tour.R doc/seqgroup_tour.Rmd
doc/seqgroup_tour.html
docs/404.html
docs/LICENSE-text.html
docs/articles/figure_seqgroup_tour/unnamed-chunk-10-1.png
docs/articles/figure_seqgroup_tour/unnamed-chunk-10-2.png
docs/articles/figure_seqgroup_tour/unnamed-chunk-11-1.png
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docs/articles/figure_seqgroup_tour/unnamed-chunk-14-1.png
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docs/articles/figure_seqgroup_tour/unnamed-chunk-7-1.png
docs/articles/figure_seqgroup_tour/unnamed-chunk-8-1.png
docs/articles/figure_seqgroup_tour/unnamed-chunk-9-1.png
docs/articles/index.html
docs/articles/seqgroup_tour.html
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/aggregateTaxa.html
docs/reference/assignColorsToGroups.html
docs/reference/assignMetadataTypes.html
docs/reference/barebonesCoNet-1.png
docs/reference/barebonesCoNet-2.png
docs/reference/barebonesCoNet.html
docs/reference/buildNetwork-1.png
docs/reference/buildNetwork-2.png
docs/reference/buildNetwork.html
docs/reference/compareDistribs-1.png
docs/reference/compareDistribs-2.png
docs/reference/compareDistribs.html
docs/reference/compareGroups-1.png
docs/reference/compareGroups.html
docs/reference/exportToCoNet.html
docs/reference/filterMetadata.html
docs/reference/findClusters.html
docs/reference/getCoreTaxa.html
docs/reference/getTaxonomy.html
docs/reference/groupBarplot-1.png
docs/reference/groupBarplot-2.png
docs/reference/groupBarplot.html
docs/reference/ibd_functions.html
docs/reference/ibd_lineages.html
docs/reference/ibd_metadata.html
docs/reference/ibd_taxa.html
docs/reference/index.html
docs/reference/intersectTables.html
docs/reference/mergeATC.html
docs/reference/mergeTables.html
docs/reference/metadataToNumeric.html
docs/reference/networkIntersectSig.html
docs/reference/seqPCoA-1.png
docs/reference/seqPCoA-2.png
docs/reference/seqPCoA.html
docs/reference/seqgroup.html
docs/reference/setNAToGroupMean.html
docs/reference/sheldon.html
docs/reference/toPhyloseq.html
docs/reference/transitionProbabs-1.png
docs/reference/transitionProbabs.html
inst/.DS_Store
man/.DS_Store
man/aggregateTaxa.Rd man/assignColorsToGroups.Rd man/assignMetadataTypes.Rd man/barebonesCoNet.Rd man/buildNetwork.Rd man/clr.Rd man/compareDistribs.Rd man/compareGroups.Rd man/exportToCoNet.Rd man/filterMetadata.Rd man/filterTaxonMatrix.Rd man/findClusters.Rd man/getCoreTaxa.Rd man/groupBarplot.Rd man/ibd_functions.Rd man/ibd_lineages.Rd man/ibd_metadata.Rd man/ibd_taxa.Rd man/intersectTables.Rd man/mergeATC.Rd man/mergeTables.Rd man/metadataToNumeric.Rd man/networkIntersectSig.Rd man/normalize.Rd man/selectSamplesGivenMetadata.Rd man/seqPCoA.Rd man/seqgroup.Rd man/setNAToGroupMean.Rd man/silhouette.Rd man/toPhyloseq.Rd man/transitionProbabs.Rd
seqgroup.Rproj
vignettes/.gitignore
vignettes/figure_seqgroup_tour/unnamed-chunk-10-1.png
vignettes/figure_seqgroup_tour/unnamed-chunk-10-2.png
vignettes/figure_seqgroup_tour/unnamed-chunk-11-1.png
vignettes/figure_seqgroup_tour/unnamed-chunk-12-1.png
vignettes/figure_seqgroup_tour/unnamed-chunk-13-1.png
vignettes/figure_seqgroup_tour/unnamed-chunk-14-1.png
vignettes/figure_seqgroup_tour/unnamed-chunk-16-1.png
vignettes/figure_seqgroup_tour/unnamed-chunk-17-1.png
vignettes/figure_seqgroup_tour/unnamed-chunk-17-2.png
vignettes/figure_seqgroup_tour/unnamed-chunk-18-1.png
vignettes/figure_seqgroup_tour/unnamed-chunk-18-2.png
vignettes/figure_seqgroup_tour/unnamed-chunk-19-1.png
vignettes/figure_seqgroup_tour/unnamed-chunk-4-1.png
vignettes/figure_seqgroup_tour/unnamed-chunk-4-2.png
vignettes/figure_seqgroup_tour/unnamed-chunk-5-1.png
vignettes/figure_seqgroup_tour/unnamed-chunk-6-1.png
vignettes/figure_seqgroup_tour/unnamed-chunk-7-1.png
vignettes/figure_seqgroup_tour/unnamed-chunk-8-1.png
vignettes/figure_seqgroup_tour/unnamed-chunk-9-1.png
vignettes/seqgroup_tour.Rmd
hallucigenia-sparsa/seqgroup documentation built on June 15, 2020, 10:37 p.m.