R/floresgut_lineages.R

In hallucigenia-sparsa/seqgroup: Analysis of Sequencing Data with Groups

#' @title Lineages for gut taxa from Flores et al.
#'
#' @description Lineages include the levels kingdom, phylum, class, order, family, genus and species.
#' @details Row names match taxon names in floresgut_taxa.
#' @return Taxon x phylogenetic level matrix of size 323 x 7
#' @docType data
#' @usage data(floresgut_lineages)
#' @keywords data, datasets
#' @references
#' Flores et al. (2014) Temporal variability is a personalized feature of the human microbiome Genome Biology 15, 531
#' \href{https://genomebiology.biomedcentral.com/articles/10.1186/s13059-014-0531-y}{Genome Biology}
#' @examples
#' data(floresgut_lineages)
"floresgut_lineages"