ibd_metadata | R Documentation |
Metadata include SRA identifier, age, diagnosis, fecal calprotectin, antibiotic and immunosuppressant usage as well as treatment with mesalamine or steroids.
data(ibd_metadata)
An object of class data.frame
with 155 rows and 8 columns.
Stool samples were taken from patients with Crohn's disease (CD, n=68) and ulcerative colitis (UC, n=53) as well as healthy controls (n=34). CD/UC vs healthy status is stored in 'Diagnosis'. The order of samples matches those of ibd_taxa.
Sample x metadata dataframe of size 155 x 8
Franzosa et al. (2019) Gut microbiome structure and metabolic activity in inflammatory bowel disease Nature Microbiology 4, 293-305 Nature Microbiology
data(ibd_metadata) # convert to numeric ibd_metadata$Fecal.Calprotectin=as.numeric(ibd_metadata$Fecal.Calprotectin) ibd_metadata$Age=as.numeric(ibd_metadata$Age) summary(ibd_metadata)
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