rcctils_expression: Gene expression matrices for TILs isolated from RCC patients...
In hammerlab/rinfino: R-friendly client to run infino (http://github.com/hammerlab/infino)
Description
Usage
Format
Details
References
Description
Used as a training dataset for infino & for demonstration/testing purposes.
Usage
1
Format
an object of class "tbl_df"
Details
Description from the author:
Tumor associated macrophages and T cells were characterized in a cohort of 73
ccRCC and 5 healthy donors using mass cytometry. Macrophage and T cell subsets
of interest were identified and sorted directly from samples known to contain
a high frequency of these subsets. CD8+ PD-1- T cells (n=6), exhausted CD8+
PD-1+ T cells (n=6), control macrophages CD14+ HLA-DR+ CD204- CD38- CD206- (n=11)
and a population of TAM characterized as CD14+ HLA-DR+ CD204+ CD38+ CD206- (n=6)
were isolated using FACS sorting.
References
E-MTAB-5640 - RNA sequencing of tumor associated macrophages and T cells in clear cell renal cell carcinoma
(ArrayExpress)
hammerlab/rinfino documentation built on May 27, 2019, 8:45 a.m.
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Description Usage Format Details References
Description
Used as a training dataset for infino & for demonstration/testing purposes.
Usage
1 |
Format
an object of class "tbl_df"
Details
Description from the author: Tumor associated macrophages and T cells were characterized in a cohort of 73 ccRCC and 5 healthy donors using mass cytometry. Macrophage and T cell subsets of interest were identified and sorted directly from samples known to contain a high frequency of these subsets. CD8+ PD-1- T cells (n=6), exhausted CD8+ PD-1+ T cells (n=6), control macrophages CD14+ HLA-DR+ CD204- CD38- CD206- (n=11) and a population of TAM characterized as CD14+ HLA-DR+ CD204+ CD38+ CD206- (n=6) were isolated using FACS sorting.
References
E-MTAB-5640 - RNA sequencing of tumor associated macrophages and T cells in clear cell renal cell carcinoma (ArrayExpress)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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