Files in hammerlab/rinfino
R-friendly client to run infino (http://github.com/hammerlab/infino)

.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/genelist-data.R R/prep_expression_matrix.R R/rcctils_expression-data.R R/rcctils_sampleinfo-data.R R/run_combat.R R/run_estimate.R R/singleorigin_expression-data.R R/singleorigin_sampleinfo-data.R R/utils.R README.md
data-raw/E-MTAB-5640.sdrf.txt
data-raw/rcc_sampleinfo.R data-raw/rcctils_expression_matrix.R
data-raw/singleorigin_data.all_genes.txt.gz
data-raw/singleorigin_data.custom_marker_genes.txt.gz
data-raw/singleorigin_data.map_sample_to_celltype.txt
data-raw/singleorigin_expression_matrix.R
data/genelist.rda
data/rcctils_expression.rda
data/rcctils_sampleinfo.rda
data/singleorigin_expression.rda
data/singleorigin_sampleinfo.rda
example_pca_plot.png
inst/bin/prep_expression_matrix
inst/testdata/kallisto/output/ERR1906200.fastq.gz/abundance.tsv
inst/testdata/kallisto/output/ERR1906200.fastq.gz/run_info.json
inst/testdata/kallisto/output/ERR1906201.fastq.gz/abundance.tsv
inst/testdata/kallisto/output/ERR1906201.fastq.gz/run_info.json
inst/testdata/kallisto/output/ERR1906202.fastq.gz/abundance.tsv
inst/testdata/kallisto/output/ERR1906202.fastq.gz/run_info.json
inst/testdata/kallisto/output/ERR1906203.fastq.gz/abundance.tsv
inst/testdata/kallisto/output/ERR1906203.fastq.gz/run_info.json
inst/testdata/kallisto/output/ERR1906204.fastq.gz/abundance.tsv
inst/testdata/kallisto/output/ERR1906204.fastq.gz/run_info.json
inst/testdata/kallisto/output/ERR1906205.fastq.gz/abundance.tsv
inst/testdata/kallisto/output/ERR1906205.fastq.gz/run_info.json
inst/testdata/kallisto/output/ERR1906206.fastq.gz/abundance.tsv
inst/testdata/kallisto/output/ERR1906206.fastq.gz/run_info.json
inst/testdata/kallisto/output/ERR1906207.fastq.gz/abundance.tsv
inst/testdata/kallisto/output/ERR1906207.fastq.gz/run_info.json
inst/testdata/kallisto/output/ERR1906208.fastq.gz/abundance.tsv
inst/testdata/kallisto/output/ERR1906208.fastq.gz/run_info.json
inst/testdata/rcctils_expression_matrix.tsv.gz
inst/testdata/test_expression_matrix.tsv.gz
man/execute_cibersort.Rd man/expdata_as_df.Rd man/expdata_as_matrix.Rd man/filter_expdata.Rd man/filter_genes.Rd man/filter_gxs_expdata.Rd man/genelist.Rd man/load_all_expdata.Rd man/load_expdata.Rd man/load_lm22_genes.Rd man/merge_expdata.Rd man/prep_expression_matrix.Rd man/rcctils_expression.Rd man/rcctils_sampleinfo.Rd man/run_cibersort.Rd man/run_combat.Rd man/run_estimate.Rd man/run_pca.Rd man/shell.Rd man/singleorigin_expression.Rd man/singleorigin_sampleinfo.Rd man/test_cibersort.Rd man/transform_cibersort_to_relative.Rd man/transform_sampleid.Rd man/transpose2gxs.Rd man/transpose2sxg.Rd man/transpose_expdata.Rd man/update_sampleinfo.Rd
rinfino.Rproj
tests/testthat.R tests/testthat/test_load_expdata.R tests/testthat/test_prep_expression_matrix.R tests/testthat/test_run_pca.R
hammerlab/rinfino documentation built on Jan. 11, 2018, 1:13 p.m.