run_combat: Run combat to normalize for batch effects
In hammerlab/rinfino: R-friendly client to run infino (http://github.com/hammerlab/infino)
Description
Run combat to normalize for batch effects
Usage
1
run_combat(df, mod = ~1, trans = log1p, batch = "batch")
Arguments
df
(tbl_df) SxG expression data, with batch stored in sampleinfo attribute
mod
(formula) adjustment for any linear covariates in sampleinfo
trans
(formula) optional formula to apply to expression data
hammerlab/rinfino documentation built on May 27, 2019, 8:45 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description
Run combat to normalize for batch effects
Usage
1 | run_combat(df, mod = ~1, trans = log1p, batch = "batch")
|
Arguments
df |
(tbl_df) SxG expression data, with batch stored in sampleinfo attribute |
mod |
(formula) adjustment for any linear covariates in sampleinfo |
trans |
(formula) optional formula to apply to expression data |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.