hammerlab/rinfino
R-friendly client to run infino (http://github.com/hammerlab/infino)

Package index
Search the hammerlab/rinfino package
Vignettes
Functions
28
Source code
16
Man pages
28
Home
/
GitHub
/
hammerlab/rinfino
/
run_cibersort: Run cibersort on expression data

run_cibersort: Run cibersort on expression data
In hammerlab/rinfino: R-friendly client to run infino (http://github.com/hammerlab/infino)

Description Usage

Description

Run cibersort on expression data

Usage

1
2
3
4
5
run_cibersort(df, output_file = file.path(tmpdir, "cibersort_output.tsv"),
  error_file = file.path(tmpdir, "cibersort_errors.txt"),
  absolute_mode = FALSE, cibersort_home = "~/cibersort",
  training_data = NULL, genelist = NULL, trans = NULL,
  tmpdir = tempdir(), filter_fun = NULL)

hammerlab/rinfino documentation built on May 27, 2019, 8:45 a.m.

Related to run_cibersort in hammerlab/rinfino...

hammerlab/rinfino index
README.md

R Package Documentation

rdrr.io home R language documentation Run R code online

Browse R Packages

CRAN packages Bioconductor packages R-Forge packages GitHub packages

We want your feedback!

Note that we can't provide technical support on individual packages. You should contact the package authors for that.
GitHub issue tracker
ian@mutexlabs.com
Personal blog

 
Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.

Close