harshsharma-cb/FASE
Analysis of RNA-Sequencing data using FASE (Finding Alternative Splicing Events).

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Search the harshsharma-cb/FASE package
Vignettes
Functions
108
Source code
29
Man pages
53
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harshsharma-cb/FASE: Analysis of RNA-Sequencing data using FASE (Finding Alternative Splicing Events).
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API

API for harshsharma-cb/FASE
Analysis of RNA-Sequencing data using FASE (Finding Alternative Splicing Events).

Global functions
.Gstructure Man page Source code
.cmm Man page Source code
.correctJunctionCoordinate Man page Source code
.ePrnaseqFunction Man page Source code
.epip.exp Man page Source code
.extractIntrons Man page Source code
.fitEPrnaseqModel Man page Source code
.fitiPrnaseqModel Man page Source code
.getEIJcounts Man page Source code
.getNumericCount Man page Source code
.iPrnaseqFunction Man page Source code
.iStructure Man page Source code
.prepareCounts Man page Source code
.propagation Man page Source code
.r.a.bias Man page Source code
.r.dup.ts Man page Source code
.removeLECounts Man page Source code
.removeLECountsTS Man page Source code
.s.exon.ip.incl Man page Source code
.seed.exon.ep.excl Man page Source code
.seed.exon.ep.incl Man page Source code
.seed.exon.ip.excl Man page Source code
.sumPvalsMethod Man page Source code
.transtruct.prep Man page Source code
DEG Man page Source code
DEJ Man page Source code
EPrnaseq Man page Source code
FASE Man page
GTFnomencJunctionM Man page Source code Source code
JunctionMatrixAnnotation Man page Source code
addAnnotationDEG Man page Source code
addAnnotationDEJ Man page Source code
addAnnotationRnaSeq Man page Source code
connected.exons.igraph Man page Source code
countMatrixGenes Man page Source code
cpmCountsDEG Man page Source code
cpmCountsDEJ Man page Source code
cpmCountsEP Man page Source code
getJunctionCountMatrix Man page Source code
getPvaluesByContrast Man page Source code
heatscore Man page Source code
iPrnaseq Man page Source code
intronGTFparser Man page Source code
intronMembershipMatrix Man page Source code
ppAuto Man page Source code
ppFASE Man page Source code
ppRawData Man page Source code
ppSumEIG Man page Source code
prepareCounts Source code
psumunif Source code
readMembershipMatrix Man page Source code
simscore Man page Source code
survFASE Man page Source code
transconc Man page Source code
transtruct Man page Source code
harshsharma-cb/FASE documentation built on Aug. 6, 2023, 1:37 a.m.

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