addAnnotationRnaSeq: Add annotation to EP/IP events
In harshsharma-cb/FASE: Analysis of RNA-Sequencing data using FASE (Finding Alternative Splicing Events).
View source: R/addAnnotationRnaSeq.R
addAnnotationRnaSeq R Documentation
Add annotation to EP/IP events
Description
Adds the associated information for each ranked cassette exon/intron retention event generated by EPrnaseq/iPrnaseq. The information includes location of the event (chromosome, start, stop, strand), position in genome and the associated gene name.
Usage
addAnnotationRnaSeq(fit, annotation = annotation)
Arguments
fit
output of EPrnaseq/iPrnaseq.
annotation
matrix; contains annotation of exons and introns, created by readMembershipMatrix.
Value
Annotated matrix of ranked cassette exon/intron retention events. Output of addAnnotationRnaSeq can be passed to getPvaluesByContrast to find differentially expressed intron retention events in a given contrast.
harshsharma-cb/FASE documentation built on Aug. 6, 2023, 1:37 a.m.
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View source: R/addAnnotationRnaSeq.R
| addAnnotationRnaSeq | R Documentation |
Add annotation to EP/IP events
Description
Adds the associated information for each ranked cassette exon/intron retention event generated by EPrnaseq/iPrnaseq. The information includes location of the event (chromosome, start, stop, strand), position in genome and the associated gene name.
Usage
addAnnotationRnaSeq(fit, annotation = annotation)
Arguments
fit |
output of |
annotation |
matrix; contains annotation of exons and introns, created by |
Value
Annotated matrix of ranked cassette exon/intron retention events. Output of addAnnotationRnaSeq can be passed to getPvaluesByContrast to find differentially expressed intron retention events in a given contrast.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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