getJunctionCountMatrix: Generate junction count matrix
In harshsharma-cb/FASE: Analysis of RNA-Sequencing data using FASE (Finding Alternative Splicing Events).
View source: R/getJunctionCountMatrix.R
getJunctionCountMatrix R Documentation
Generate junction count matrix
Description
This function combines tophat2 pipeline output junctions.bed files after mapping reads to genome/trancriptome. It can be called separately for combining junction.bed files for the FASE pipeline.
Usage
getJunctionCountMatrix(files)
Arguments
files
junction bed files.
Value
Junction read counts matrix.
References
F. Hoffgaard, P. Weil, K. Hamacher. BioPhysConnectoR: Connecting Sequence Information and Biophysical Models. BMC Bioinformatics volume 11, Article number: 199 (2010).
harshsharma-cb/FASE documentation built on Aug. 6, 2023, 1:37 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/getJunctionCountMatrix.R
| getJunctionCountMatrix | R Documentation |
Generate junction count matrix
Description
This function combines tophat2 pipeline output junctions.bed files after mapping reads to genome/trancriptome. It can be called separately for combining junction.bed files for the FASE pipeline.
Usage
getJunctionCountMatrix(files)
Arguments
files |
junction bed files. |
Value
Junction read counts matrix.
References
F. Hoffgaard, P. Weil, K. Hamacher. BioPhysConnectoR: Connecting Sequence Information and Biophysical Models. BMC Bioinformatics volume 11, Article number: 199 (2010).
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.