addAnnotationDEJ: Annotation of differentially expressed junctions
In harshsharma-cb/FASE: Analysis of RNA-Sequencing data using FASE (Finding Alternative Splicing Events).
addAnnotationDEJ R Documentation
Annotation of differentially expressed junctions
Description
Add annotation to ranked differentially expressed junctions of given contrast returned by DEJ.
Usage
addAnnotationDEJ(JunctionMatrixA, fit, contrast)
Arguments
JunctionMatrixA
annotated junction matrix containing junction read counts, produced by JunctionMatrixAnnotation.
fit
output of DEJ, that contains ranking of differentially expressed junctions.
contrast
contrast from contrast matrix, whose ranking is required.
Value
Annotated ranking of differentially expressed junctions of a given contrast. The output can be saved using write.csv or write.xlsx.
harshsharma-cb/FASE documentation built on Aug. 6, 2023, 1:37 a.m.
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| addAnnotationDEJ | R Documentation |
Annotation of differentially expressed junctions
Description
Add annotation to ranked differentially expressed junctions of given contrast returned by DEJ.
Usage
addAnnotationDEJ(JunctionMatrixA, fit, contrast)
Arguments
JunctionMatrixA |
annotated junction matrix containing junction read counts, produced by |
fit |
output of |
contrast |
contrast from contrast matrix, whose ranking is required. |
Value
Annotated ranking of differentially expressed junctions of a given contrast. The output can be saved using write.csv or write.xlsx.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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