simscore: Similarity Score for network edge weight
In harshsharma-cb/FASE: Analysis of RNA-Sequencing data using FASE (Finding Alternative Splicing Events).
View source: R/networkAnalysis.R
simscore R Documentation
Similarity Score for network edge weight
Description
Similarity Score for network edge weight
Usage
simscore(ep, ep.exp, ip, ip.exp)
Arguments
ep
ExonPointer file containing cassette exon event ranking.
ep.exp
ExonPointer cassete exon expression file.
ip
IntronPointer file containing intron retention event ranking.
ip.exp
IntronPointer intron retention expression file.
Value
Similarity Score gives cosine similarity between the splice index of two genes. It can be used as edge weight for an unweighted network.
harshsharma-cb/FASE documentation built on Aug. 6, 2023, 1:37 a.m.
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View source: R/networkAnalysis.R
| simscore | R Documentation |
Similarity Score for network edge weight
Description
Similarity Score for network edge weight
Usage
simscore(ep, ep.exp, ip, ip.exp)
Arguments
ep |
ExonPointer file containing cassette exon event ranking. |
ep.exp |
ExonPointer cassete exon expression file. |
ip |
IntronPointer file containing intron retention event ranking. |
ip.exp |
IntronPointer intron retention expression file. |
Value
Similarity Score gives cosine similarity between the splice index of two genes. It can be used as edge weight for an unweighted network.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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