addAnnotationDEG: Annotation of differentially expressed genes
In harshsharma-cb/FASE: Analysis of RNA-Sequencing data using FASE (Finding Alternative Splicing Events).
addAnnotationDEG R Documentation
Annotation of differentially expressed genes
Description
Add gene annotation to ranked differentially expressed genes for a given contrast, using output of DEG function.
Usage
addAnnotationDEG(geneCount, fit, contrast)
Arguments
geneCount
summarized read counts of genes.
fit
output of DEG function that contains ranking of differentially expressed genes.
contrast
a contrast from contrast matrix, whose ranking is required.
Value
Annotated ranking of differentially expressed genes of given contrast. The output can be saved using write.csv or write.xlsx.
harshsharma-cb/FASE documentation built on Aug. 6, 2023, 1:37 a.m.
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| addAnnotationDEG | R Documentation |
Annotation of differentially expressed genes
Description
Add gene annotation to ranked differentially expressed genes for a given contrast, using output of DEG function.
Usage
addAnnotationDEG(geneCount, fit, contrast)
Arguments
geneCount |
summarized read counts of genes. |
fit |
output of |
contrast |
a contrast from contrast matrix, whose ranking is required. |
Value
Annotated ranking of differentially expressed genes of given contrast. The output can be saved using write.csv or write.xlsx.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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