Files in harshsharma-cb/FASE

Analysis of RNA-Sequencing data using FASE (Finding Alternative Splicing Events).

FASE tutorial.pdf FASE_0.1.24_manual.pdf R/DEG.R R/DEJ.R R/EPrnaseq.R R/FASE.R R/GTFnomencJunctionM.R R/JunctionMatrixAnnotation.R R/TS.prep.R R/addAnnotationRnaSeq.R R/connected.exon.R R/countMatrixGenes.R R/cpmCountsEP.R R/getJunctionCountMatrix.R R/getPvaluesByContrast.R R/iPrnaseq.R R/intronGTFparser.R R/intronMembershipMatrix.R R/networkAnalysis.R R/ppAuto.R R/ppFASE.R R/ppRawData.R R/ppSumEIG.R R/prepareCounts.R R/propagation.R R/readMembershipMatrix.R R/seed.exon.R R/survFASE.R R/transconc.R R/transtruct.R R/transtruct.prep.R README.md man/DEG.Rd man/DEJ.Rd man/EPrnaseq.Rd man/FASE.Rd man/GTFnomencJunctionM.Rd man/JunctionMatrixAnnotation.Rd man/addAnnotationDEG.Rd man/addAnnotationDEJ.Rd man/addAnnotationRnaSeq.Rd man/connected.exons.igraph.Rd man/countMatrixGenes.Rd man/cpmCountsDEG.Rd man/cpmCountsDEJ.Rd man/cpmCountsEP.Rd man/dot-Gstructure.Rd man/dot-cmm.Rd man/dot-correctJunctionCoordinate.Rd man/dot-ePrnaseqFunction.Rd man/dot-epip.exp.Rd man/dot-extractIntrons.Rd man/dot-fitEPrnaseqModel.Rd man/dot-fitiPrnaseqModel.Rd man/dot-getEIJcounts.Rd man/dot-getNumericCount.Rd man/dot-iPrnaseqFunction.Rd man/dot-iStructure.Rd man/dot-prepareCounts.Rd man/dot-propagation.Rd man/dot-r.a.bias.Rd man/dot-r.dup.ts.Rd man/dot-removeLECounts.Rd man/dot-removeLECountsTS.Rd man/dot-s.exon.ip.incl.Rd man/dot-seed.exon.ep.excl.Rd man/dot-seed.exon.ep.incl.Rd man/dot-seed.exon.ip.excl.Rd man/dot-sumPvalsMethod.Rd man/dot-transtruct.prep.Rd man/getJunctionCountMatrix.Rd man/getPvaluesByContrast.Rd man/heatscore.Rd man/iPrnaseq.Rd man/intronGTFparser.Rd man/intronMembershipMatrix.Rd man/ppAuto.Rd man/ppFASE.Rd man/ppRawData.Rd man/ppSumEIG.Rd man/readMembershipMatrix.Rd man/simscore.Rd man/survFASE.Rd man/transconc.Rd man/transtruct.Rd