compareSets: compareSets

In heuselm/mocode: Integrates MS-based-proteomics Data Analysis Code

compareSets

Description

Comparison of sets, e.g. peptides or proteins detected by a given analysis. Draws both UpSetR and roughly area-proportional Venn Diagrams via the eulerr package. For the comparison of more sets, see compareSets function.

Usage

compareSets(
  sets_list = list(Set1 = c("A", "B", "C", "D", "E"), Set2 = c("A", "B", "D", "E", "F"),
    Set3 = c("B", "D", "E", "F", "G", "H")),
  venn_quantities = TRUE,
  plot_pdf = TRUE,
  pdf_analysis_tag = "current_analysis",
  plot_title = "set comparison"
)

Arguments

sets_list	List of Character vectors with the respective sets. List names must be unique!
venn_quantities	whether quantities (overlap size numbers) are plotted in Venn Diagrams. This is recommended because the eulerr Venn Diagrams overlap areas are only with error proportional to actual overlap size.
plot_pdf	selection whether pdf plots are created or whether the output occurs exclusively within Rconsole.
plot_title	character selection either "R" or "pdf"

Value

returns a list of set comparison objects and plots from both UpSetR and Eulerr

heuselm/mocode documentation built on Oct. 23, 2023, 8:43 a.m.