plotTicProfiles: plotTicProfiles

In heuselm/mocode: Integrates MS-based-proteomics Data Analysis Code

plotTicProfiles

Description

A function to extract and plot TIC profiles from Thermo.raw mass spectrometry data files

Usage

plotTicProfiles(
  path_to_raw = "../data/dda/",
  study_design = NULL,
  write_csv = "none"
)

Arguments

path_to_raw	Path folder containing the .raw files
study_design	Optional, if plots by condition are desired. Study design table as data.table or path to tab-separated .txt with mandatory columns: filename: raw file name including .raw extension condition: String, biological condition (e.g. "treated" and "untreated") replicate: Replicate number (integer).
write_csv	Character, whether .csv output shall be written next to raw files: "with_rawfiles" in the current working directory: "workdir" not at all: "none"

Value

list with elements tic_table (data.table) and plot (ggplot)

heuselm/mocode documentation built on Oct. 23, 2023, 8:43 a.m.