createGroupsFromNetworkTable: createGroupsFromNetworkTable create protein groups around...

In heuselm/mocode: Integrates MS-based-proteomics Data Analysis Code

createGroupsFromNetworkTable create protein groups around network nodes with all proteins connected by 1 edge (first degree interactors)

Description

createGroupsFromNetworkTable create protein groups around network nodes with all proteins connected by 1 edge (first degree interactors)

Usage

createGroupsFromNetworkTable(
  interaction_table,
  n.cores = detectCores() - 1,
  id_column_1 = "UniprotA",
  id_column_2 = "UniprotB"
)

Arguments

interaction_table	Interaction network in edge table format (data.frame)
id_column_1	Name of the column containing protein identifier #1
id_column_2	Name of the column containing protein identifier #2

Value

A data.frame containing group name (seed node name) and its first line interactors e.g. for use as "complex hypotheses" for

Author(s)

Moritz Heusel

heuselm/mocode documentation built on Oct. 23, 2023, 8:43 a.m.