splitFragPipeProteinTable: splitFragPipeProteinTable Splits FragPipe...

In heuselm/mocode: Integrates MS-based-proteomics Data Analysis Code

splitFragPipeProteinTable Splits FragPipe combined_protein.tsv table into one table per quantification type

Description

splitFragPipeProteinTable Splits FragPipe combined_protein.tsv table into one table per quantification type

Usage

splitFragPipeProteinTable(
  combined_protein_tsv = "combined_protein.tsv",
  write_split_tables = TRUE
)

Arguments

write_split_tables	Logical, whether split tables should be written, or only returned as elements of a list in R. Default: TRUE
combined_protein_file	path to combined folder location. Character, either of length 1; light crosslinker only is assumed; if two folders are provided (length 2) it is assumed that an isotopically labelled XL reagent was used; with two separate searches performed for each channel. The first folder is assumed to be from the light search and the second folder is assumed to be from the heavy search.

Value

a list of the separate tables

heuselm/mocode documentation built on Oct. 23, 2023, 8:43 a.m.