ImmunoBase | R Documentation |
This dataset contains data obtained from ImmunoBase. For each of 20 immune-diseases, its associated variants, regions, and nearby genes (within 500kb) are stored.
data(ImmunoBase)
a list with 5 components:
disease
: a character of disease name
variants
: an object of class "GRanges", storing genomic
locations of associated variants plus their significance and odd
ratios
regions
: an object of class "GRanges", storing genomic
locations of associated regions
genes_variants
: a named vector for nearby genes within
500kb of associated variants; the element names are gene symbols, the
element values for the shortest distance to all associated variants
genes_regions
: a named vector for nearby genes within
500kb of associated regions; the element names are gene symbols, the
element values for the shortest distance to all associated regions
## Not run: ImmunoBase <- xRDataLoader(RData.customised='ImmunoBase') names(ImmunoBase) ImmunoBase$AS$disease ImmunoBase$AS$variants head(ImmunoBase$AS$genes_variants) head(ImmunoBase$AS$genes_regions) ## End(Not run)
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