eTerm: Definition for S3 class 'eTerm'

In hfang-bristol/XGR: Exploring Genomic Relations for Enhanced Interpretation Through Enrichment, Similarity, Network and Annotation Analysis

Definition for S3 class eTerm

Description

eTerm mush have following components: term_info, annotation, g, data, background, overlap, fc, zscore, pvalue, adjp, cross.

Usage

eTerm(
term_info,
annotation,
g,
data,
background,
overlap,
fc,
zscore,
pvalue,
adjp,
cross
)

## S3 method for class 'eTerm'
print(x, ...)

Arguments

term_info	a data frame
annotation	a list
g	an 'igraph' object
data	a vector
background	a vector
overlap	a vector
fc	a vector
zscore	a vector
pvalue	a vector
adjp	a vector
cross	a matrix
x	an object of class eTerm
...	other parameters

Value

an object of S3 class eTerm

Examples

RData.location <- "http://galahad.well.ox.ac.uk/bigdata"
## Not run: 
eTerm(term_info, annotation, g, data, background, overlap, fc, zscore,
pvalue, adjp, cross)

## End(Not run)

hfang-bristol/XGR documentation built on Feb. 4, 2023, 7:05 a.m.