R/data.R

In hiddengenome/altum: deepG

#' Example training dataset consiting of a sequence of nucleotides of CRISPR loci
#' Filtered for unambigous characters and contains only characters in the vocabulary {A,G,G,T
#' }
#' Can be loaded to workspace via data(crispr_sample)
#' @format Large character of 4.9 Mb
#' @references \url{http://github.com/philippmuench}
"crispr_sample"

#' Example training dataset consiting of a sequence of nucleotides of CRISPR loci
#' Filtered for unambigous characters and contains only characters in the vocabulary {A,G,G,T
#' }
#' contain all CRISPR loci found in NCBI representative genomes using CRT
#' Can be loaded to workspace via data(crispr_full)
#' @format Large character of 4.9 Mb
#' @references \url{http://github.com/philippmuench}
"crispr_full"

#' Training dataset of synthetic parenthesis language
#' Can be loaded to workspace via data(parenthesis)
#' @format Large character of 4.9 Mb
#' @references \url{http://github.com/philippmuench}
"parenthesis"

#' E. coli genome for evaluation 
#' Can be loaded to workspace via data(ecoli)
#' @format Large character of 4.4 Mb
#' @references \url{https://science.sciencemag.org/content/277/5331/1453.long}
"ecoli"

#' subset of the E. coli genome for evaluation 
#' Can be loaded to workspace via data(ecoli_small)
#' @format character
#' @references \url{https://science.sciencemag.org/content/277/5331/1453.long}
"ecoli_small"