hidelab/pcxn: Exploring, analyzing and visualizing functions utilizing the pcxnData package
Discover the correlated pathways/gene sets of a single pathway/gene set or discover correlation relationships among multiple pathways/gene sets. Draw a heatmap or create a network of your query and extract members of each pathway/gene set found in the available collections (MSigDB H hallmark, MSigDB C2 Canonical pathways, MSigDB C5 GO BP and Pathprint).
Getting started
Browse package contents
Package details |
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| Author | Sokratis Kariotis, Yered Pita-Juarez, Winston Hide, Wenbin Wei |
| Bioconductor views | ExperimentData ExpressionData GEO Homo_sapiens_Data MicroarrayData OneChannelData PathwayInteractionDatabase |
| Maintainer | Sokratis Kariotis <s.kariotis@sheffield.ac.uk> |
| License | MIT + file LICENSE |
| Version | 2.0.0 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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