Files in hloefflerwirth/oposSOM

Comprehensive analysis of transcriptome data

R/RcppExports.R R/affymetrix_quality_check.r R/biomart_available.r R/cancer_hallmarks.r R/check_input_parameters.r R/chromosome_expression_reports.r R/color_scheme.r R/detect_ensembl_dataset.r R/detect_spots_functions.r R/detect_spots_modules.r R/diffExpression_statistics.r R/difference_analyses.r R/entropy_profiles.r R/gene_lists.r R/geneset_analysis.r R/geneset_overviews.r R/geneset_profiles_and_maps.r R/geneset_statistic_modules.r R/geneset_statistic_samples.r R/get_running_average.r R/get_statistic.r R/group_analyses.r R/group_assignment.r R/group_specific_genesets.r R/heatmaps.r R/html_differences_summary.r R/html_geneset_analysis.r R/html_group_summary.r R/html_module_summary.r R/html_psf_analysis.r R/html_sample_summary.r R/html_summary.r R/module_correlation_map.r R/modules_CSV.r R/modules_chromosomes.r R/modules_profiles.r R/modules_relations.r R/modules_reports.r R/opossom.r R/pat_assignment.r R/prepare_annotation.r R/primary_analysis.r R/psf.analysis.r R/psf.overview.heatmaps.r R/psf.report.sheets.r R/quality_check.r R/quantile_normalization.r R/radarchart.r R/sample_expression_portraits.r R/sample_similarity_analysis_ED.r R/sample_similarity_analysis_ICA.r R/sample_similarity_analysis_SOM.r R/sample_similarity_analysis_cor.r R/som.linear.init.r R/som.training.r R/spot_borders.r R/summary_sheets_groups.r R/summary_sheets_modules.r R/summary_sheets_pats.r R/summary_sheets_samples.r R/supporting_maps.r R/topology_profiles.r R/util.r R/workspace_check.r README.md man/oposSOM-package.Rd man/opossom.genesets.Rd man/opossom.new.Rd man/opossom.run.Rd man/opossom.tissues.Rd vignettes/HTML.pdf vignettes/Size and runtime.pdf vignettes/Summary.pdf vignettes/browser.pdf