output.binding.results: Write out determined binding peaks into a text file table

In hms-dbmi/spp: ChIP-Seq Processing Pipeline

Description

Writes out determined binding positions into a text file. The file will contain a table with each row corresponding to a detected position, with the following columns

• chr: chromosome or target sequence

• pos: position of detected binding site on the chromosome/sequence

• score: a score reflecting magnitude of the binding

• Evalue: E-value corresponding to the peak magnitude

• FDR: FDR corresponding to the peak magnitude

• enrichment.lb: lower bound of the fold-enrichment ratio

• enrichment.mle: maximum likelihood estimate of the fold-enrichment ratio

Usage

output.binding.results(results, filename)

Arguments

results	output of the find.binding.positions
filename	file name

hms-dbmi/spp documentation built on Sept. 20, 2020, 7 p.m.