Description Usage Arguments Value
Determine if the dataset has reached absolute saturation, or otherwise find minimal fold enrichment ratio above which the detection of peaks has stabilized enough to meet the saturation criteria.
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signal.data |
signal tag vector list |
control.data |
control tag vector list |
n.chains |
number of dataset subsamples to use |
step.size |
subsampling step describing the saturation
criteria. The criteria requires the set of detected binding sites to
be stable (as described by the |
test.agreement |
Fraction of the detected peaks that should agree between the full and subsampled datasets. |
chains |
optional parameter, giving pre-calculated chains |
cluster |
optional |
return.chains |
whether subsampled dataset results should be returned as well |
enrichment.background.scales |
one or multiple window scales at
which the background tag density should be assessed. See
|
... |
additional parameters should be the same as those passed
to the |
n.steps |
n.steps |
A single, or multple (if multiple enrichment.background.scales
were
provided) MSER value. A value of 1 or very close to it implies that
the dataset has reached absolute saturation based on the given criteria.
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