select.informative.tags: Choose informative tags
In hms-dbmi/spp: ChIP-Seq Processing Pipeline
Description
Usage
Arguments
Value
Description
For datasets with tag alignment quality information (e.g. number of
mismatches for Eland alignments),
get.binding.characteristics determines whether inclusion
of tags from each specific quality bin improves the cross-correlation
profile. The present function is then used to actually select these
informative tags, discarding all other information, including quality
scores that are not used in further processing.
Usage
1
select.informative.tags(data, binding.characteristics)
Arguments
data
Full alignment data (a list with $tags and $quality elements)
binding.characteristics
result of a
get.binding.characteristics call. If NULL value is
supplied,all tags will be accepted.
Value
A chromosome-wise tag list. Each element of the list corresponds to a
chromosome and is a numeric vector of 5' tag coordinates, with sign
designating DNA strand.
This form of tag data is used for most of the other processing.
hms-dbmi/spp documentation built on Sept. 20, 2020, 7 p.m.
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Description Usage Arguments Value
Description
For datasets with tag alignment quality information (e.g. number of
mismatches for Eland alignments),
get.binding.characteristics determines whether inclusion
of tags from each specific quality bin improves the cross-correlation
profile. The present function is then used to actually select these
informative tags, discarding all other information, including quality
scores that are not used in further processing.
Usage
1 | select.informative.tags(data, binding.characteristics)
|
Arguments
data |
Full alignment data (a list with $tags and $quality elements) |
binding.characteristics |
result of a
|
Value
A chromosome-wise tag list. Each element of the list corresponds to a chromosome and is a numeric vector of 5' tag coordinates, with sign designating DNA strand. This form of tag data is used for most of the other processing.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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