Description Usage Arguments Value
Reads in MAQ alignment results in text format (that results from "maq mapview" command.)
1 | read.maqmap.tags(filename, read.tag.names = F, fix.chromosome.names = T)
|
filename |
MAQ text output file |
read.tag.names |
Whether the tag names should be read in |
fix.chromosome.names |
Whether to remove ".fa" from the end of the sequence names |
tags |
A vector of 5' tag coordinates, with negative values corresponding to tags mapped to the negative strand. |
quality |
Number of mismatches |
names |
Tag names, if |
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