Man pages for hmumme/finalProjectMUMME
What the Package Does (One Line, Title Case)
| buildCITE | function to build Seurat Object with CITE seq files |
| checkFeatures | Function to return list of features found in assay for Seurat... |
| estProtein | Estimate target protein expression for TF |
| getScale | Estimate protein expression by calculating scaling factor per... |
| getSIG | Function to assist with voltf() and plotProteins() |
| getTargets | Function to retrieve Log2FC values for TF targets in ATAC... |
| getTFs | Function to retrieve top upregulated TFs for RNA... |
| plotEn | Plots enrichment of TF gene set |
| plotProteins | Function to plot protein levels of significant TF targets in... |
| tfBar | function to generate boxplots of estimated protein expression... |
| tfMap | Function to plot heatmap for top 10 TFs found differentially... |
| tfSimilarity | Function to plot a matrix with Jaccard Similarity values... |
| voltf | Function to make volcano plot for each top upregulated TF in... |
