getTFs: Function to retrieve top upregulated TFs for RNA...
In hmumme/finalProjectMUMME: What the Package Does (One Line, Title Case)
getTFs R Documentation
Function to retrieve top upregulated TFs for RNA clusters/groups
Description
Function to retrieve top upregulated TFs for RNA clusters/groups
Usage
getTFs(obj, markers, tfs, num = 20)
Arguments
obj
Seurat object with RNA data, active ident should be what markers are comparing (ex: seurat_clusters)
markers
differentially expressed genes by cluster or group
num
number of TFs to export per cluster/group, default is 20
db
TF-target database with names(db) as TFs
hmumme/finalProjectMUMME documentation built on April 22, 2022, 12:43 a.m.
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| getTFs | R Documentation |
Function to retrieve top upregulated TFs for RNA clusters/groups
Description
Function to retrieve top upregulated TFs for RNA clusters/groups
Usage
getTFs(obj, markers, tfs, num = 20)
Arguments
obj |
Seurat object with RNA data, active ident should be what markers are comparing (ex: seurat_clusters) |
markers |
differentially expressed genes by cluster or group |
num |
number of TFs to export per cluster/group, default is 20 |
db |
TF-target database with names(db) as TFs |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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