tfMap: Function to plot heatmap for top 10 TFs found differentially...
In hmumme/finalProjectMUMME: What the Package Does (One Line, Title Case)
tfMap R Documentation
Function to plot heatmap for top 10 TFs found differentially expressed (RNA) per cluster/grouping
Description
Function to plot heatmap for top 10 TFs found differentially expressed (RNA) per cluster/grouping
Usage
tfMap(obj, markers, tfs, type = "both")
Arguments
obj
Seurat object with RNA data, active ident should be what markers are comparing (ex: seurat_clusters)
markers
differentially expressed genes by cluster or group
type
type of markers to plot; options are upregulated (up), downregulated (down), or default both
db
TF database with names(db) as TFs
Value
ggplot object with Heatmap
hmumme/finalProjectMUMME documentation built on April 22, 2022, 12:43 a.m.
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| tfMap | R Documentation |
Function to plot heatmap for top 10 TFs found differentially expressed (RNA) per cluster/grouping
Description
Function to plot heatmap for top 10 TFs found differentially expressed (RNA) per cluster/grouping
Usage
tfMap(obj, markers, tfs, type = "both")
Arguments
obj |
Seurat object with RNA data, active ident should be what markers are comparing (ex: seurat_clusters) |
markers |
differentially expressed genes by cluster or group |
type |
type of markers to plot; options are upregulated (up), downregulated (down), or default both |
db |
TF database with names(db) as TFs |
Value
ggplot object with Heatmap
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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