voltf: Function to make volcano plot for each top upregulated TF in...
In hmumme/finalProjectMUMME: What the Package Does (One Line, Title Case)
voltf R Documentation
Function to make volcano plot for each top upregulated TF in a group/cluster
Description
Function to make volcano plot for each top upregulated TF in a group/cluster
Usage
voltf(targets, db, tfs, ident, filename, logT = 0.5, pT = 0.01)
Arguments
targets
dataframe output from getTargets()
ident
ident to plot TF-targets for
filename
filename for saving pdf with all plots
logT
log2FC threshold of significance for volcano plot (default = 0.5)
pT
FDR threshold of significance for volcano plot (default = 0.01)
Value
saves pdf with filename
hmumme/finalProjectMUMME documentation built on April 22, 2022, 12:43 a.m.
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| voltf | R Documentation |
Function to make volcano plot for each top upregulated TF in a group/cluster
Description
Function to make volcano plot for each top upregulated TF in a group/cluster
Usage
voltf(targets, db, tfs, ident, filename, logT = 0.5, pT = 0.01)
Arguments
targets |
dataframe output from getTargets() |
ident |
ident to plot TF-targets for |
filename |
filename for saving pdf with all plots |
logT |
log2FC threshold of significance for volcano plot (default = 0.5) |
pT |
FDR threshold of significance for volcano plot (default = 0.01) |
Value
saves pdf with filename
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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