tfSimilarity: Function to plot a matrix with Jaccard Similarity values...

In hmumme/finalProjectMUMME: What the Package Does (One Line, Title Case)

Function to plot a matrix with Jaccard Similarity values based on how similar up-regulated TFs are between clusters/groups

Description

Function to plot a matrix with Jaccard Similarity values based on how similar up-regulated TFs are between clusters/groups

Usage

tfSimilarity(obj, markers, db, plot = T)

Arguments

obj	Seurat object with RNA data, active ident should be what markers are comparing (ex: seurat_clusters)
markers	differentially expressed genes by cluster or group
db	TF database with names(db) as TFs
plot	logical to indicate whether to return plot (TRUE) or return similarity matrix (FALSE)

Value

either ggplot object or Jaccard Similarity matrix

hmumme/finalProjectMUMME documentation built on April 22, 2022, 12:43 a.m.