API for hshdndx/new-to-CNV
patternCNV: a versatile tool for detecting copy number changes from exome-seq data
| Global functions | |
|---|---|
| PatCNVData-class | Man page |
| PatCNVSession-class | Man page |
| avgExonCoverage | Man page |
| avgExonCoverage,PatCNVData-method | Man page |
| chrCoverageQC | Man page |
| cnvMatrix | Man page |
| cnvMatrix,PatCNVData-method | Man page |
| computeMultiCNV | Man page |
| computeSingleCNV | Man page |
| coverageMatrix | Man page |
| coverageMatrix,PatCNVData-method | Man page |
| createSession | Man page |
| estimateFDR | Man page |
| exonInfo | Man page |
| exonInfo,PatCNVData-method | Man page |
| exonInfo,PatCNVSession-method | Man page |
| exonNum | Man page |
| exonNum,PatCNVData-method | Man page |
| exonNum,PatCNVSession-method | Man page |
| exportCNVtable | Man page |
| fdrMatrix | Man page |
| fdrMatrix,PatCNVData-method | Man page |
| fitNullModel | Man page |
| geneCoverageQC | Man page |
| hg19.Chr_length_vec | Man page |
| learnPatterns | Man page |
| makeSimulation | Man page |
| patternCNV | Man page |
| patternCNV-package | Man page |
| plotAutosomeCNV | Man page |
| plotChrCNV | Man page |
| plotGeneHeatmap | Man page |
| sampleCoverage | Man page |
| sampleCoverage,PatCNVData-method | Man page |
| sampleInfo | Man page |
| sampleInfo,PatCNVData-method | Man page |
| sampleInfo,PatCNVSession-method | Man page |
| sampleNum | Man page |
| sampleNum,PatCNVData-method | Man page |
| sampleNum,PatCNVSession-method | Man page |
| scanMultiCovg | Man page |
| scanSingleCovg | Man page |
| segmentCNV | Man page |
| show,PatCNVData-method | Man page |
| show,PatCNVSession-method | Man page |
| show-methods | Man page |
| sim.cnvData | Man page |
| sim.covgData | Man page |
| summary,ANY-method | Man page |
| summary,PatCNVData-method | Man page |
| summary,PatCNVSession-method | Man page |
| summary-methods | Man page |
