Files in hshdndx/new-to-CNV
patternCNV: a versatile tool for detecting copy number changes from exome-seq data

.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/AllClasses.R R/AllGenerics.R R/AllMethods.R
R/R file explanation
R/chrCoverageQC.R R/computeMultiCNV.R R/computeSingleCNV.R R/createSession.R R/estimateFDR.R R/exportCNVtable.R R/fitNullModel.R R/geneCoverageQC.R R/learnPatterns.R R/makeSimulation.R R/miscFunctions.R R/plotAutosomeCNV.R R/plotChrCNV.R R/plotGeneHeatmap.R R/scanMultiCovg.R R/scanSingleCovg.R R/segmentCNV.R README.md
data/hg19.Chr_length_vec.RData
data/sim.cnvData.RData
data/sim.covgData.RData
inst/extdata/avg_pattern.wig
inst/extdata/cnv.simulated.sorted.dedup.bam.coverage.wig
inst/extdata/cnv2.simulated.sorted.dedup.bam.coverage.wig
inst/extdata/complete_simu.ini
inst/extdata/mean_RPKM.txt
inst/extdata/median_RPKM.txt
inst/extdata/sim_exon_key.txt
inst/extdata/simple_simu.ini
inst/extdata/simu_sample_info.txt
inst/extdata/simulated1.sorted.dedup.bam.coverage.wig
inst/extdata/simulated10.sorted.dedup.bam.coverage.wig
inst/extdata/simulated2.sorted.dedup.bam.coverage.wig
inst/extdata/simulated3.sorted.dedup.bam.coverage.wig
inst/extdata/simulated4.sorted.dedup.bam.coverage.wig
inst/extdata/simulated5.sorted.dedup.bam.coverage.wig
inst/extdata/simulated6.sorted.dedup.bam.coverage.wig
inst/extdata/simulated7.sorted.dedup.bam.coverage.wig
inst/extdata/simulated8.sorted.dedup.bam.coverage.wig
inst/extdata/simulated9.sorted.dedup.bam.coverage.wig
inst/extdata/var_pattern.wig
man/PatCNVData-class.Rd man/PatCNVSession-class.Rd man/avgExonCoverage.Rd man/chrCoverageQC.Rd man/cnvMatrix.Rd man/computeMultiCNV.Rd man/computeSingleCNV.Rd man/coverageMatrix.Rd man/createSession.Rd man/estimateFDR.Rd man/exonInfo.Rd man/exonNum.Rd man/exportCNVtable.Rd man/fdrMatrix.Rd man/fitNullModel.Rd man/geneCoverageQC.Rd man/hg19.Chr_length_vec.Rd man/learnPatterns.Rd man/makeSimulation.Rd man/patternCNV-package.Rd man/plotAutosomeCNV.Rd man/plotChrCNV.Rd man/plotGeneHeatmap.Rd man/sampleCoverage.Rd man/sampleInfo.Rd man/sampleNum.Rd man/scanMultiCovg.Rd man/scanSingleCovg.Rd man/segmentCNV.Rd man/show-methods.Rd man/sim.cnvData.Rd man/sim.covgData.Rd man/summary-methods.Rd
vignettes/patternCNV_vig.Rnw
hshdndx/new-to-CNV documentation built on May 16, 2017, 11:26 p.m.