sampleInfo: Retrieve sample information

In hshdndx/new-to-CNV: patternCNV: a versatile tool for detecting copy number changes from exome-seq data

Description

This function extracts specified sample information from an object of PatCNVData-class. The typical sample information could be "sample.name", "sample.type", and/or "subject.ID".

Usage

sampleInfo(obj, sample.name = NULL, attrib = c("sample.name", "sample.type"))

Arguments

obj	an object of PatCNVSession-class or PatCNVData-class
sample.name	a character vector containing sample names. A value of NULL instructs the function to select all the samples
attrib	a character vector containing selected sample attributes. The typical sample information could be "sample.name", "sample.type", and/or "subject.ID".

Value

a data frame or a vector with given sample information attributes specified by attrib

Author(s)

Chen Wang

Examples

#=== load a simulation example
config.filename <- 'sim1.ini'
makeSimulation(config.filename)
sim.session <- createSession(config.filename)

#=== print sample information
print(sampleInfo(sim.session))

hshdndx/new-to-CNV documentation built on May 17, 2019, 5:55 p.m.