API for hshdndx/new-to-CNV
patternCNV: a versatile tool for detecting copy number changes from exome-seq data

Global functions
PatCNVData-class Man page
PatCNVSession-class Man page
avgExonCoverage Man page
avgExonCoverage,PatCNVData-method Man page
chrCoverageQC Man page Source code
cnvMatrix Man page
cnvMatrix,PatCNVData-method Man page
computeMultiCNV Man page Source code
computeSingleCNV Man page Source code
coverageMatrix Man page
coverageMatrix,PatCNVData-method Man page
createSession Man page Source code
estimateFDR Man page Source code
exonInfo Man page
exonInfo,PatCNVData-method Man page
exonInfo,PatCNVSession-method Man page
exonNum Man page
exonNum,PatCNVData-method Man page
exonNum,PatCNVSession-method Man page
exportCNVtable Man page Source code
fdrMatrix Man page
fdrMatrix,PatCNVData-method Man page
fitNullModel Man page Source code
formatExonID Source code
geneCoverageQC Man page Source code
getDataMatrix Source code
getExonInfo Source code
getExonInfoData Source code
getSampleInfo Source code
getSampleInfoData Source code
hg19.Chr_length_vec Man page
learnPatterns Man page Source code
makeSimulation Man page Source code
patCNV.DIR.str Source code
patCNV.ShowData Source code
patCNV.ShowSession Source code
patCNV.create.DIR Source code
patCNV.file.exists Source code
patCNV.lap.pval Source code
patCNV.print.table Source code
patternCNV Man page
patternCNV-package Man page
plotAutosomeCNV Man page Source code
plotChrCNV Man page Source code
plotGeneHeatmap Man page Source code
sampleCoverage Man page
sampleCoverage,PatCNVData-method Man page
sampleInfo Man page
sampleInfo,PatCNVData-method Man page
sampleInfo,PatCNVSession-method Man page
sampleNum Man page
sampleNum,PatCNVData-method Man page
sampleNum,PatCNVSession-method Man page
scanMultiCovg Man page Source code
scanSingleCovg Man page Source code
segmentCNV Man page Source code
show,PatCNVData-method Man page
show,PatCNVSession-method Man page
show-methods Man page
sim.cnvData Man page
sim.covgData Man page
summary,ANY-method Man page
summary,PatCNVData-method Man page
summary,PatCNVSession-method Man page
summary-methods Man page
hshdndx/new-to-CNV documentation built on May 16, 2017, 11:26 p.m.