sim.covgData: simulated data of "PatCNVData" class with coverage...

Description Usage Format Details Examples

Description

This is a simulated data of "PatCNVData" class with coverage information for testing purpose.

Usage

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Format

sim.covgData of "PatCNVData" class

Details

The purpose of this data is to faciliate users to test examples. If interested, this simulation data can be easily generated as follows:

#=== load a simulation example

config.filename <- "sim1.ini"

makeSimulation(config.filename)

#=== create patternCNV session

sim.session <- createSession(config.filename)

#=== summarize coverage information

sim.covgData <- scanMultiCovg(sim.session)

Examples

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#=== load simulated data with coverage information
data(sim.covgData)

#=== display coverage of a few top exons in sample "n2" and "n3"
head(coverageMatrix(sim.covgData,c("n2","n3")))

hshdndx/new-to-CNV documentation built on May 16, 2017, 11:26 p.m.