sim.covgData: simulated data of "PatCNVData" class with coverage...

In hshdndx/new-to-CNV: patternCNV: a versatile tool for detecting copy number changes from exome-seq data

Description

This is a simulated data of "PatCNVData" class with coverage information for testing purpose.

Usage

data(sim.covgData)

Format

sim.covgData of "PatCNVData" class

Details

The purpose of this data is to faciliate users to test examples. If interested, this simulation data can be easily generated as follows:

#=== load a simulation example

config.filename <- "sim1.ini"

makeSimulation(config.filename)

#=== create patternCNV session

sim.session <- createSession(config.filename)

#=== summarize coverage information

sim.covgData <- scanMultiCovg(sim.session)

Examples

#=== load simulated data with coverage information
data(sim.covgData)

#=== display coverage of a few top exons in sample "n2" and "n3"
head(coverageMatrix(sim.covgData,c("n2","n3")))

hshdndx/new-to-CNV documentation built on May 17, 2019, 5:55 p.m.