API for huqiwen0313/speciesTree
Tree based method for cross-species integration
| Global functions | |
|---|---|
| AddMarkersToTree | Source code |
| AddProportionTest | Source code |
| AddTreeAttribute | Man page Source code |
| AddassGeneToTree | Source code |
| AllUpperLevelInfo | Man page Source code |
| GetDifferentialGenes | Source code |
| HeatmapSpecies | Source code |
| MappingHeatmap | Source code |
| MarkCells | Source code |
| MarkMixedNode | Man page Source code |
| MarkMixedNodePairwise | Source code |
| NormTree | Man page Source code |
| NormTreeWithinFactor | Man page Source code |
| PlotTreeConservationPie | Source code |
| TransferDend | Man page Source code |
| TreeConservationPie | Source code |
| TreeDivergentRatio | Source code |
| TreeEntropy | Man page Source code |
| TreeStability | Man page Source code |
| TreeStabilityDend | Man page Source code |
| TreeStabilityFlat | Source code |
| UpperLevelInfo | Man page Source code |
| addFeatures | Source code |
| addWithinSpeciesComp | Source code |
| adjustTreeheight | Source code |
| alignTreePlot | Source code |
| assign_values_to_nodes | Man page Source code |
| bestClusterTreeThresholds | Man page Source code |
| buildSpeciesTree | Man page Source code |
| cluster.matrix.expression.distances | Man page Source code |
| clusterMappingSummary | Man page Source code |
| compare_cl | Source code |
| dendSetColor2factorNormMixing | Man page Source code |
| dendSetColorByMixing | Man page Source code |
| dendSetColorByNormMixing | Man page Source code |
| dendSetWidthBysize | Man page Source code |
| expHeatMap | Source code |
| getClusters | Source code |
| getLeafClusters | Source code |
| getLeafcontent | Man page Source code |
| getLeafcontentFlat | Man page Source code |
| getUpperLevelNode | Man page Source code |
| get_divergent_heuristic_clusters | Source code |
| heatmapPropCells | Source code |
| hello | Man page |
| leavesSubtree | Source code |
| mappingLabel | Man page Source code |
| pairwiseNormTree | Source code |
| plot3factorLengend | Man page Source code |
| plotStability | Man page Source code |
| plotStabilityDistr | Source code |
| propTestGene | Source code |
| prop_test | Source code |
| pruneTree | Man page Source code |
| pruneTreeEntropy | Man page Source code |
| pruneTreeWithSpecies | Source code |
| removeLowStabilityLeaf | Source code |
| reorder_matrix | Source code |
| rleiden.detection | Man page Source code |
| sampleCells | Source code |
| subSampleTree | Man page Source code |
| subSamplingGraph | Man page Source code |
| subsampleTree.conos | Source code |
| transferLeaflabel | Man page Source code |
