buildSpeciesTree: build entire tree based on dendrogram and subsampled...

In huqiwen0313/speciesTree: Tree based method for cross-species integration

Description

build entire tree based on dendrogram and subsampled dendrograms

Usage

buildSpeciesTree(
  dend,
  subsamples = NULL,
  cls.groups,
  cellannot,
  species,
  upperlevelannot = NULL,
  renameCluster = TRUE,
  plot = TRUE
)

Arguments

dend	dendrogram obj of original tree
subsamples	list contains subsampled dendrograms and correspondent cell clusters
cls.groups	clusters of original dendrograms
cellannot	cell annotations
species	factor annoted which cell belong to which species
upperlevelannot	higher-level cell annotations
plot	plot the built tree or not

huqiwen0313/speciesTree documentation built on Dec. 24, 2021, 8:10 p.m.