cluster.matrix.expression.distances: Evaluate expression distances between clusters
In huqiwen0313/speciesTree: Tree based method for cross-species integration

Description Usage Arguments

View source: R/algorithms.R

Evaluate expression distances between clusters

cluster.matrix.expression.distances(
  counts,
  groups = NULL,
  useVariablegenes = F,
  variableGenes = NULL,
  dist = "cor",
  use.single.cell.comparisons = FALSE,
  use.scaled.data = FALSE,
  min.cluster.size = 1,
  max.n.cells = Inf,
  n.cells = 200
)

counts

raw count matrix - rows are cells and columns are genes

huqiwen0313/speciesTree documentation built on Dec. 24, 2021, 8:10 p.m.

huqiwen0313/speciesTree index

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