subSampleTree: generate subsampled dendrograms from gene expression matrix
In huqiwen0313/speciesTree: Tree based method for cross-species integration
Description
generate subsampled dendrograms from gene expression matrix
Usage
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subSampleTree(
counts,
cls.groups = NULL,
subsample.groups = NULL,
stability.subsamples = 10,
Variablegenes = NULL,
stability.subsampling.fraction = 0.95,
renameCluster = FALSE
)
Arguments
counts
scaled count matrix - rows are cells, colums are genes
cls.group
original group to subsample
subsample.group
list contains subsampled groups
huqiwen0313/speciesTree documentation built on Dec. 24, 2021, 8:10 p.m.
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Description
generate subsampled dendrograms from gene expression matrix
Usage
1 2 3 4 5 6 7 8 9 | subSampleTree(
counts,
cls.groups = NULL,
subsample.groups = NULL,
stability.subsamples = 10,
Variablegenes = NULL,
stability.subsampling.fraction = 0.95,
renameCluster = FALSE
)
|
Arguments
counts |
scaled count matrix - rows are cells, colums are genes |
cls.group |
original group to subsample |
subsample.group |
list contains subsampled groups |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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