TreeStability: return stability scores for each node by searching for...

In huqiwen0313/speciesTree: Tree based method for cross-species integration

Description

return stability scores for each node by searching for optimal matching tree

Usage

TreeStability(
  dataobj,
  dend,
  algorithm = "expression",
  cls.groups,
  cls.subsamples,
  stability.subsamples = 10,
  stability.subsampling.fraction = 0.95,
  min.group.size = 30,
  n.cores = 10
)

Arguments

dataobj	igraph object if algorithm=walktrap, conos or gene expression matrix if algorithm=expression
dend	original dendrogram
algorithm	algorithms for contruct hierachical tree in subsamples: walktrap or based on expression (expression)

huqiwen0313/speciesTree documentation built on Dec. 24, 2021, 8:10 p.m.