CNVDemoData: Demo Data Set for Copy Number Variation

In hzhanghenry/caOmicsV: Visualization of multi-dimentional cancer genomics data

Description

A data frame with copy number variation of 26 genes in 60 samples. Used for point plot demo on caOmicsV bioNetCircos layout, or binary data plot on caOmicsV bioMatrix layout after transformed to binary data.

Usage

data("CNVDemoData")

Format

A data frame with 26 observations on the following 61 variables.

Gene_Symbol

a factor with levels ACTN1 ADAMTS13 AMIGO3 ATP2A1 BCO2 CDKN3 CFP CNBP COL15A1 CSRNP1 CXCL12 DBH DDX55 ECM1 ELOVL1 ESM1 FAM81A FCN3 KCNQ1 LEPREL1 LIFR LILRA6 LILRB5 LOC222699 LOC283050 LRRC16A LYVE1 MAEL MAN1B1 MRPS25 MT1F NIPA2 NPHP4 NR5A2 OLFML3 PLVAP PROX1 PTH1R RBL2 RCAN1 RND3 SEMA3F SLC26A6 TOMM40L TSEN34 VDAC3

TCGA.BC.A216.Normal

a numeric vector

TCGA.BD.A2L6.Normal

a numeric vector

TCGA.BD.A3EP.Normal

a numeric vector

TCGA.DD.A113.Normal

a numeric vector

TCGA.DD.A114.Normal

a numeric vector

TCGA.DD.A118.Normal

a numeric vector

TCGA.DD.A119.Normal

a numeric vector

TCGA.DD.A11A.Normal

a numeric vector

TCGA.DD.A11B.Normal

a numeric vector

TCGA.DD.A11C.Normal

a numeric vector

TCGA.DD.A11D.Normal

a numeric vector

TCGA.DD.A1EB.Normal

a numeric vector

TCGA.DD.A1EC.Normal

a numeric vector

TCGA.DD.A1EG.Normal

a numeric vector

TCGA.DD.A1EH.Normal

a numeric vector

TCGA.DD.A1EI.Normal

a numeric vector

TCGA.DD.A1EJ.Normal

a numeric vector

TCGA.DD.A1EL.Normal

a numeric vector

TCGA.DD.A39V.Normal

a numeric vector

TCGA.DD.A39W.Normal

a numeric vector

TCGA.DD.A39X.Normal

a numeric vector

TCGA.DD.A39Z.Normal

a numeric vector

TCGA.DD.A3A1.Normal

a numeric vector

TCGA.DD.A3A2.Normal

a numeric vector

TCGA.DD.A3A3.Normal

a numeric vector

TCGA.EP.A12J.Normal

a numeric vector

TCGA.EP.A26S.Normal

a numeric vector

TCGA.ES.A2HT.Normal

a numeric vector

TCGA.FV.A23B.Normal

a numeric vector

TCGA.FV.A2QR.Normal

a numeric vector

TCGA.BC.A216.Tumor

a numeric vector

TCGA.BD.A2L6.Tumor

a numeric vector

TCGA.BD.A3EP.Tumor

a numeric vector

TCGA.DD.A113.Tumor

a numeric vector

TCGA.DD.A114.Tumor

a numeric vector

TCGA.DD.A118.Tumor

a numeric vector

TCGA.DD.A119.Tumor

a numeric vector

TCGA.DD.A11A.Tumor

a numeric vector

TCGA.DD.A11B.Tumor

a numeric vector

TCGA.DD.A11C.Tumor

a numeric vector

TCGA.DD.A11D.Tumor

a numeric vector

TCGA.DD.A1EB.Tumor

a numeric vector

TCGA.DD.A1EC.Tumor

a numeric vector

TCGA.DD.A1EG.Tumor

a numeric vector

TCGA.DD.A1EH.Tumor

a numeric vector

TCGA.DD.A1EI.Tumor

a numeric vector

TCGA.DD.A1EJ.Tumor

a numeric vector

TCGA.DD.A1EL.Tumor

a numeric vector

TCGA.DD.A39V.Tumor

a numeric vector

TCGA.DD.A39W.Tumor

a numeric vector

TCGA.DD.A39X.Tumor

a numeric vector

TCGA.DD.A39Z.Tumor

a numeric vector

TCGA.DD.A3A1.Tumor

a numeric vector

TCGA.DD.A3A2.Tumor

a numeric vector

TCGA.DD.A3A3.Tumor

a numeric vector

TCGA.EP.A12J.Tumor

a numeric vector

TCGA.EP.A26S.Tumor

a numeric vector

TCGA.ES.A2HT.Tumor

a numeric vector

TCGA.FV.A23B.Tumor

a numeric vector

TCGA.FV.A2QR.Tumor

a numeric vector

Value

None

Examples

    data(CNVDemoData)

hzhanghenry/caOmicsV documentation built on May 17, 2019, 10:07 p.m.