plotBioMatrixRowNames: Plot Row Names on caOmicsV bioMatrix Layout

In hzhanghenry/caOmicsV: Visualization of multi-dimentional cancer genomics data

Description

Plot row names on the left or right side of biomatrix plot area. Phenotype names, gene names, and remark notes are all plotted with this function. bioMatrix layout and graphic device must be initialized first.

Usage

    plotBioMatrixRowNames(geneNames, areaName, colors, side="left", 
            skipPlotRows=0, skipPlotColumns=0)

Arguments

geneNames	character vector, row names to be plotted
areaName	character vector, either "omicsData" or "phenotype"
colors	character vector of color names or R color specification
side	character vector, either "left" or "right"
skipPlotRows	non-negative integer, total rows on plot area that should be skipped from the first row, default 0
skipPlotColumns	non-negative integer, columns (sampleWidth) will be skipped when plotting items on remark area

Value

None

Author(s)

Henry Zhang

Examples

    initializeBioMatrixPlot(numOfGenes=20, numOfSamples=50)

    geneNames  <- paste0("gene_", 1:20)
    miRNANames <- paste0("miRNA_", 1:20)

    showBioMatrixPlotLayout(geneNames, paste("Sample", 1:50),  "Diagnosis")
    plotBioMatrixRowNames(miRNANames, areaName="omicsData", colors="blue", 
                side="right")

hzhanghenry/caOmicsV documentation built on May 17, 2019, 10:07 p.m.