Files in hzhanghenry/caOmicsV
Visualization of multi-dimentional cancer genomics data
DESCRIPTION
NAMESPACE
R/caOmicsV.R
R/caOmicsV.bioMatrix.R
R/caOmicsV.bioNetCircos.R
README.md
data/CNVDemoData.RData
data/RNA2miRNA.RData
data/RNASeq.RData
data/RNASeqDemoData.RData
data/biomatrixPlotDemoData.RData
data/bionetPlotDemoData.RData
data/methylDemoData.RData
data/miRNA.RData
data/miRNADemoData.RData
data/sampleDemoData.RData
demo/00Index
demo/caOmicsV.biomatrix.layout.demo.R
demo/caOmicsV.bionetcircos.layout.demo.R
man/CA_OMICS_ENV.Rd
man/CA_OMICS_NAME.Rd
man/CA_OMICS_NA_STRING.Rd
man/CNVDemoData.Rd
man/RNA2miRNA.Rd
man/RNASeq.Rd
man/RNASeqDemoData.Rd
man/bioMatrixLegend.Rd
man/bioNetCircosPlot.Rd
man/bioNetLegend.Rd
man/biomatrixPlotDemoData.Rd
man/bionetPlotDemoData.Rd
man/caOmicsV-package.Rd
man/caOmicsV.biomatrix.eset.Rd
man/caOmicsV.bionet.eset.Rd
man/convertToZScores.Rd
man/drawBioNetNodeBackground.Rd
man/eraseBioNetNode.Rd
man/getBezierCurve.Rd
man/getBioMatrixDataRowTop.Rd
man/getBioMatrixPlotParameters.Rd
man/getBioNetNodeLinkLine.Rd
man/getBioNetParameters.Rd
man/getBioNetPlotLocations.Rd
man/getBioNetSamplePlotPosition.Rd
man/getCaOmicsVColors.Rd
man/getCaOmicsVPlotTypes.Rd
man/getDefaultNaStrings.Rd
man/getESet.Rd
man/getHeatmapColorScales.Rd
man/getPlotDataSet.Rd
man/getPlotOmicsData.Rd
man/getPlotSampleData.Rd
man/getPlotSummaryData.Rd
man/getRelatedPlotData.Rd
man/initializeBioMatrixPlot.Rd
man/initializeBioNetCircos.Rd
man/labelBioNetNodeNames.Rd
man/linkBioNetNodes.Rd
man/linkBioNetSamples.Rd
man/methylDemoData.Rd
man/miRNA.Rd
man/miRNADemoData.Rd
man/plotBioMatrix.Rd
man/plotBioMatrixBars.Rd
man/plotBioMatrixBinaryData.Rd
man/plotBioMatrixCategoryData.Rd
man/plotBioMatrixHeatmap.Rd
man/plotBioMatrixRowNames.Rd
man/plotBioMatrixSampleData.Rd
man/plotBioMatrixSampleNames.Rd
man/plotBioNetBars.Rd
man/plotBioNetCircos.Rd
man/plotBioNetHeatmap.Rd
man/plotBioNetLines.Rd
man/plotBioNetPoints.Rd
man/plotBioNetPolygons.Rd
man/plotHeatmapColorScale.Rd
man/resetBioNetNodePlotAreaBoundary.Rd
man/sampleDemoData.Rd
man/setBioMatrixBaseCoordinates.Rd
man/setBioMatrixPlotArea.Rd
man/setBioMatrixPlotParameters.Rd
man/setBioNetCircosBasePlotPositions.Rd
man/setBioNetNodeLayout.Rd
man/setBioNetPlotAreaBackground.Rd
man/setBioNetPlotParameters.Rd
man/setCaOmicsVColors.Rd
man/setDefaultNaStrings.Rd
man/showBioMatrixPlotLayout.Rd
man/showBioNetNodesLayout.Rd
man/showSupportedBioNetCircosPlotType.Rd
man/sortClinicalData.Rd
man/sortOmicsDataByColumn.Rd
man/sortOmicsDataByRow.Rd
vignettes/Introduction_to_caOmicsV.Rnw
vignettes/caOmicsV_bioMatrix_Layout_Demo.png
vignettes/caOmicsV_bioMatrix_Layout_Plot.png
vignettes/caOmicsV_bioNetCircos_Layout_Plot.png
vignettes/caOmicsV_bionetcircos_node_layout.png
vignettes/caOmicsV_bionetcircos_plot_manually.png
