plotBioNetPolygons: Polygon Plot on caOmicsV bioNetCircos Layout

In hzhanghenry/caOmicsV: Visualization of multi-dimentional cancer genomics data

Description

Plot category data as polygons on node(s) of caOmicsV bioNetCircos layout. bioNetCircos layout and graphic device must be initialized first. Polygon colours are converted from category value with build in colour series. Use getcaOmicsVColors() and setcaOmicsVColors(colorList) to see or reset customized colours.

Usage

    plotBioNetPolygons(dataValues, outer, inner)

Arguments

dataValues	matrix of character or numeric for category data
outer	non-negative numeric, the outer boundary of plot area from node center
inner	non-negative numeric, the innner boundary of plot area from node center

Value

None

Author(s)

Henry Zhang

Examples

    data(bionetPlotDemoData)
    expr <- bionetPlotDemoData$heatmapData[[1]]
    bioNet <- bc3net(expr)

    initializeBioNetCircos(bioNet, totalSamples=60)
    showBioNetNodesLayout()
    dataValues <- matrix(rep(c(1:3), each=20), nrow=1)
    plotBioNetPolygons(dataValues, outer=3, inner=2)

hzhanghenry/caOmicsV documentation built on May 17, 2019, 10:07 p.m.