Description Usage Arguments Value Author(s) Examples
The bioNet legend includes a heatmap color scale and names for each track, such as "1. Tissue: T(red), N(blue)", "2. Methylation", "3. miRNA hsa-mir-424", "4. Gene Expression", ... A graphic device and igraph object must be initialized first.
1 2 3 | bioNetLegend(dataNames, textCoor=NULL, heatmapCoor=NULL,
scaleWidth, scaleHeight, heatmapMin=-3, heatmapMax=3,
colorType="BlueWhiteRed", direction="h")
|
dataNames |
character vector, names of data on each circular track |
textCoor |
numeric vector of length 2, x and y coordinates for legend text. |
heatmapCoor |
numeric vector of length 2, x and y coordinates for heatmap colour scale |
scaleWidth |
non-negative numeric, length (width) of heatmap color scale |
scaleHeight |
non-negative numeric, height of heatmap color scale |
heatmapMin |
numeric, minimum value of heatmap color scale, default -3 (z-score) |
heatmapMax |
numeric, maximum value of heatmap color scale, default 3 (z-score) |
colorType |
character vector, one of "BlueWhiteRed", "GreenWhiteRed", "GreenYellowRed", "GreenBlackRed" , or "YellowToRed" |
direction |
character, direction of heatmap color scale, either 'h' for horizontal or 'v' for vertical. |
None
Henry Zhang
1 2 3 4 | data(bionetPlotDemoData)
plotBioNetCircos(bionetPlotDemoData)
dataNames <- c("Tissue Type", "RNASeq", "miRNASeq", "Methylation", "CNV")
bioNetLegend(dataNames)
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.